Structure Prediction
AlphaFold3 reproduction, predict protein/nucleic acid/small molecule complexes
Wohlwend et. al
Chai Discovery team
Accurate and quick protein structure prediction for multimers and monomers
DeepMind et. al. + ColabFold
Bytedance
Qiao et. al
Design CDR sequence and structure for antibodies
Luo et. al
Design property-aware CDR sequence/structure
Villegas-Morcillo et. al
Finetune boltz on custom cifs
Antibody, Nanobody and TCR structure prediction
Abanades et. al
AlphaFold3 reproduction
Corley et. al
Given a density map and a protein sequence automatically build a model for it
Jamali et. al
Su et. al
Modified AlphaFold for higher accuracy multimer structure prediction
Kalakoti et. al
Antibody structure prediction, design, and optimization
Kong et. al
Fine-tunable protein structure prediction
Li et. al
Cyclic peptide structure prediction
Rettie et. al
AlphaFold fine tuned with a flow matching objective
Jing et. al
Rigid body protein-protein docking
Stahl et. al
Predict structures of large protein assemblies
Shor et. al
Predict T Cell Receptor structures
Yin R et. al
Predicting multiple conformations via sequence clustering
Wayment-Steele et. al
Glukhov E et. al
Structure prediction with multimeric templates
Mirabello et. al
Predict protein structure given a sequence
Lin et. al
Predict protein conformations with subsampled AlphaFold2
Monteiro da Silva et. al
Multiple sequence alignment (MSA)
Steinegger et. al
GPCR structure prediction
Heo et. al
All-Atom Protein Generative Model
Wu et. al
Predict protein structure without MSA
Use RosettaFold to predict complexes of proteins, nucleic acids, and small molecules
Krishna R et. al
