Structure Prediction
AlphaFold3 reproduction, predict protein/nucleic acid/small molecule complexes
Wohlwend et. al
Chai Discovery team
Accurate and quick protein structure prediction for multimers and monomers
DeepMind et. al. + ColabFold
Bytedance
Qiao et. al
Design CDR sequence and structure for antibodies
Luo et. al
Design property-aware CDR sequence/structure
Villegas-Morcillo et. al
Finetune boltz on custom cifs
Antibody, Nanobody and TCR structure prediction
Abanades et. al
AlphaFold3 reproduction
Corley et. al
Given a density map and a protein sequence automatically build a model for it
Jamali et. al
Su et. al
Modified AlphaFold for higher accuracy multimer structure prediction
Kalakoti et. al
Antibody structure prediction, design, and optimization
Kong et. al
Antibody structure prediction
Kenlay et. al
Fine-tunable protein structure prediction
Li et. al
Cyclic peptide structure prediction
Rettie et. al
AlphaFold fine tuned with a flow matching objective
Jing et. al
Rigid body protein-protein docking
Stahl et. al
Predict T Cell Receptor structures
Yin R et. al
Predicting multiple conformations via sequence clustering
Wayment-Steele et. al
Glukhov E et. al
Structure prediction with multimeric templates
Mirabello et. al
Predict protein structure given a sequence
Lin et. al
Predict protein conformations with subsampled AlphaFold2
Monteiro da Silva et. al
Multiple sequence alignment (MSA)
Steinegger et. al
GPCR structure prediction
Heo et. al
All-Atom Protein Generative Model
Wu et. al
Predict protein structure without MSA
Use RosettaFold to predict complexes of proteins, nucleic acids, and small molecules
Krishna R et. al