Batch Workflows

Job Name

All file upload or protein sequence fields support batch inputs. If your tool has multiple batch fields, select whether you want to pair them 1:1 or to iterate through all pairwise combinations.

Enable sweeping over combinations of dropdown/number fields parameters

Select Tool:

AlphaFold Batch Submission

Predict the structure of a protein monomer or multimer given its amino acid sequence
Uses DeepMind's AlphaFold v2.3.2 (implemented by ColabFold)
Specify optional additional settings including recycles, MSA depth, custom templates
Receive up to five pdb models, including scores for pTM, PAE, iPTM/iPAE (multimers), and pLDDT

Est. run time per job: 30m

Each fasta file contains one job/complex

Sequence Batch

Protein amino acid sequence, use : to separate chains for multimers

View Optional Settings

Number of Models

MSA Mode

Number of recycles

[0, 20]

Number of models to relax

[0, 5]

Pair Mode

Use PDB 100 Templates

Random seed

Max MSA

Recycle Early Stop Tolerance

Score with IPSAE

Use dropout

Submit 1 job

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