Structure Prediction
AlphaFold3 reproduction, predict protein/nucleic acid/small molecule complexes
Wohlwend et. al
Accurate and quick protein structure prediction for multimers and monomers
DeepMind et. al. + ColabFold
Chai Discovery team
Predicts protein, nucleic acid, and small-molecule complexes. AlphaFold3-level model with strong performance on protein–protein and antibody–antigen interfaces.
Bytedance
Design property-aware CDR sequence/structure
Villegas-Morcillo et. al
Antibody, Nanobody and TCR structure prediction
Abanades et. al
AlphaFold3 reproduction
Corley et. al
Given a density map and a protein sequence automatically build a model for it
Jamali et. al
Su et. al
Modified AlphaFold for higher accuracy multimer structure prediction
Kalakoti et. al
Antibody structure prediction
Kenlay et. al
Cyclic peptide structure prediction
Rettie et. al
AlphaFold fine tuned with a flow matching objective
Jing et. al
Predict T Cell Receptor structures
Yin R et. al
Predicting multiple conformations via sequence clustering
Wayment-Steele et. al
Glukhov E et. al
Structure prediction with multimeric templates
Mirabello et. al
Predict protein structure given a sequence
Lin et. al
Predict protein conformations with subsampled AlphaFold2
Monteiro da Silva et. al
Multiple sequence alignment (MSA)
Steinegger et. al
Predict protein structure without MSA
Wu et. al
Predict conformational flexibility of antibody and TCR CDR3 loops
Spoendlin et. al
Structure-based TCR design for peptide-MHC targets
Bradley et. al
RNA foundation model for sequence embeddings and secondary structure prediction
Chen et. al
Gradient-based binder design using Boltz-2
Nick Boyd et. al